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Setting up your computer
Python code in Jupyter notebooks
Pitfalls when working with Jupyter notebooks
Bioimage Analysis in Jupyter Notebooks
BiA-Bob

AI-assisted Notebook generation

Translating notebooks

Documenting code

Statistical testing

Graphical user interfaces

Generating data

Configuring Bia-bob

Bia-Bob’s System Prompt

Under the hood: Configure bia-bob’s behaviour through system messages

Further exercises

Download slides

License CC-BY 4.0

Site Navigation

Setting up your computer
Python code in Jupyter notebooks
Pitfalls when working with Jupyter notebooks
Bioimage Analysis in Jupyter Notebooks
BiA-Bob

AI-assisted Notebook generation

Translating notebooks

Documenting code

Statistical testing

Graphical user interfaces

Generating data

Configuring Bia-bob

Bia-Bob’s System Prompt

Under the hood: Configure bia-bob’s behaviour through system messages

Further exercises

Download slides

License CC-BY 4.0

Ctrl+K

Large Language Models for BioImage Analysis

Setup

Setting up your computer

Python Jupyter Notebooks

Python code in Jupyter notebooks
Pitfalls when working with Jupyter notebooks
Bioimage Analysis in Jupyter Notebooks

AI-assisted Code Generation

BiA-Bob
AI-assisted Notebook generation
Translating notebooks
Documenting code
Bug fixing

Use-cases

Statistical testing
Graphical user interfaces
Generating data

Configuring Bia-Bob

Configuring Bia-bob
Bia-Bob’s System Prompt
Under the hood: Configure bia-bob’s behaviour through system messages

Moving ahead

Further exercises

Links

Download slides
License CC-BY 4.0
Imprint

repository
open issue

Index

By Robert Haase

Last updated on 2025-09-14.

Copyright: Licensed CC-BY 4.0 unless mentioned otherwise. Contributions and feedback are welcome.